#!/usr/bin/env python3
# Copyright (c) Meta Platforms, Inc. and affiliates.
#
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
# pyre-strict
import datetime
from collections import OrderedDict
from enum import Enum
from inspect import isclass
from io import StringIO
from logging import Logger
from typing import Any
import numpy as np
import pandas as pd
import torch
from ax.core.base_trial import BaseTrial
from ax.core.data import Data
from ax.core.experiment import Experiment
from ax.core.generator_run import GeneratorRun
from ax.core.multi_type_experiment import MultiTypeExperiment
from ax.core.objective import Objective
from ax.core.parameter import Parameter
from ax.core.parameter_constraint import (
OrderConstraint,
ParameterConstraint,
SumConstraint,
)
from ax.core.search_space import SearchSpace
from ax.exceptions.storage import JSONDecodeError, STORAGE_DOCS_SUFFIX
from ax.modelbridge.generation_node_input_constructors import InputConstructorPurpose
from ax.modelbridge.generation_strategy import (
GenerationNode,
GenerationStep,
GenerationStrategy,
)
from ax.modelbridge.model_spec import ModelSpec
from ax.modelbridge.registry import _decode_callables_from_references, ModelRegistryBase
from ax.modelbridge.transition_criterion import (
AuxiliaryExperimentCheck,
TransitionCriterion,
TrialBasedCriterion,
)
from ax.models.torch.botorch_modular.surrogate import Surrogate, SurrogateSpec
from ax.models.torch.botorch_modular.utils import ModelConfig
from ax.storage.json_store.decoders import (
batch_trial_from_json,
botorch_component_from_json,
tensor_from_json,
trial_from_json,
)
from ax.storage.json_store.registry import (
CORE_CLASS_DECODER_REGISTRY,
CORE_DECODER_REGISTRY,
)
from ax.utils.common.logger import get_logger
from ax.utils.common.serialization import (
SerializationMixin,
TClassDecoderRegistry,
TDecoderRegistry,
)
from ax.utils.common.typeutils import checked_cast
from ax.utils.common.typeutils_torch import torch_type_from_str
from pyre_extensions import none_throws
logger: Logger = get_logger(__name__)
# Deprecated model registry entries and their replacements.
# Used below in `_update_deprecated_model_registry`.
_DEPRECATED_MODEL_TO_REPLACEMENT: dict[str, str] = {
"GPEI": "BOTORCH_MODULAR",
"MOO": "BOTORCH_MODULAR",
"FULLYBAYESIAN": "SAASBO",
"FULLYBAYESIANMOO": "SAASBO",
"FULLYBAYESIAN_MTGP": "SAAS_MTGP",
"FULLYBAYESIANMOO_MTGP": "SAAS_MTGP",
"ST_MTGP_LEGACY": "ST_MTGP",
"ST_MTGP_NEHVI": "ST_MTGP",
}
# pyre-fixme[3]: Return annotation cannot be `Any`.
[docs]
def object_from_json(
# pyre-fixme[2]: Parameter annotation cannot be `Any`.
object_json: Any,
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> Any:
"""Recursively load objects from a JSON-serializable dictionary."""
if type(object_json) in (str, int, float, bool, type(None)) or isinstance(
object_json, Enum
):
return object_json
elif isinstance(object_json, list):
return [
object_from_json(
i,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for i in object_json
]
elif isinstance(object_json, tuple):
return tuple(
object_from_json(
i,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for i in object_json
)
elif isinstance(object_json, dict):
if "__type" not in object_json:
# this is just a regular dictionary, e.g. the one in Parameter
# containing parameterizations
return {
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
_type = object_json.pop("__type")
if _type == "datetime":
return datetime.datetime.strptime(
object_json["value"], "%Y-%m-%d %H:%M:%S.%f"
)
elif _type == "OrderedDict":
return OrderedDict(
[
(
k,
object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
for k, v in object_json["value"]
]
)
elif _type == "DataFrame":
# Need dtype=False, otherwise infers arm_names like "4_1"
# should be int 41
return pd.read_json(StringIO(object_json["value"]), dtype=False)
elif _type == "ndarray":
return np.array(object_json["value"])
elif _type == "Tensor":
return tensor_from_json(json=object_json)
elif _type.startswith("torch"):
# Torch types will be encoded as "torch_<type_name>", so we drop prefix
return torch_type_from_str(
identifier=object_json["value"], type_name=_type[6:]
)
elif _type == "ListSurrogate":
return surrogate_from_list_surrogate_json(
list_surrogate_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _type == "set":
return set(object_json["value"])
# Used for decoding classes (not objects).
elif _type in class_decoder_registry:
return class_decoder_registry[_type](object_json)
elif _type not in decoder_registry:
err = (
f"The JSON dictionary passed to `object_from_json` has a type "
f"{_type} that is not registered with a corresponding class in "
f"DECODER_REGISTRY. {STORAGE_DOCS_SUFFIX}"
)
raise JSONDecodeError(err)
# pyre-fixme[9, 24]: Generic type `type` expects 1 type parameter, use
# `typing.Type[<base type>]` to avoid runtime subscripting errors.
_class: type = decoder_registry[_type]
if isclass(_class) and issubclass(_class, Enum):
name = object_json["name"]
if issubclass(_class, ModelRegistryBase):
name = _update_deprecated_model_registry(name=name)
# to access enum members by name, use item access
return _class[name]
elif isclass(_class) and issubclass(_class, torch.nn.Module):
return botorch_component_from_json(botorch_class=_class, json=object_json)
elif _class == GeneratorRun:
return generator_run_from_json(
object_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == GenerationStep:
return generation_step_from_json(
generation_step_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == GenerationNode:
return generation_node_from_json(
generation_node_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == ModelSpec:
return model_spec_from_json(
model_spec_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == GenerationStrategy:
return generation_strategy_from_json(
generation_strategy_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == MultiTypeExperiment:
return multi_type_experiment_from_json(
object_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == Experiment:
return experiment_from_json(
object_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == SearchSpace:
return search_space_from_json(
search_space_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class == Objective:
return objective_from_json(
object_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif _class in (SurrogateSpec, Surrogate, ModelConfig):
if "input_transform" in object_json:
(
input_transform_classes_json,
input_transform_options_json,
) = get_input_transform_json_components(
input_transforms_json=object_json.pop("input_transform"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
object_json["input_transform_classes"] = input_transform_classes_json
object_json["input_transform_options"] = input_transform_options_json
if "outcome_transform" in object_json:
(
outcome_transform_classes_json,
outcome_transform_options_json,
) = get_outcome_transform_json_components(
outcome_transforms_json=object_json.pop("outcome_transform"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
object_json["outcome_transform_classes"] = (
outcome_transform_classes_json
)
object_json["outcome_transform_options"] = (
outcome_transform_options_json
)
elif isclass(_class) and (
issubclass(_class, TrialBasedCriterion)
or issubclass(_class, AuxiliaryExperimentCheck)
):
# TrialBasedCriterion contains a list of `TrialStatus` for args.
# AuxiliaryExperimentCheck contains AuxiliaryExperimentPurpose objects
# They need to be unpacked by hand to properly retain the types.
return unpack_transition_criteria_from_json(
class_=_class,
transition_criteria_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
elif isclass(_class) and issubclass(_class, SerializationMixin):
return _class(
# Note: we do not recursively call object_from_json here again as
# that would invalidate design principles behind deserialize_init_args.
# Any Ax class that needs serialization and who's init args include
# another Ax class that needs serialization should implement its own
# _to_json and _from_json methods and register them appropriately.
**_class.deserialize_init_args(
args=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
)
if _class is SurrogateSpec:
# This is done here rather than with other _type checks above, since
# we want to have the input & outcome transform arguments updated
# before we call surrogate_spec_from_json.
return surrogate_spec_from_json(
surrogate_spec_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return ax_class_from_json_dict(
_class=_class,
object_json=object_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
else:
err = (
f"The object {object_json} passed to `object_from_json` has an "
f"unsupported type: {type(object_json)}."
)
raise JSONDecodeError(err)
# pyre-fixme[3]: Return annotation cannot be `Any`.
[docs]
def ax_class_from_json_dict(
# pyre-fixme[24]: Generic type `type` expects 1 type parameter, use
# `typing.Type` to avoid runtime subscripting errors.
_class: type,
object_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> Any:
"""Reinstantiates an Ax class registered in `DECODER_REGISTRY` from a JSON
dict.
"""
return _class(
**{
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
)
[docs]
def generator_run_from_json(
object_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> GeneratorRun:
"""Load Ax GeneratorRun from JSON."""
time_created_json = object_json.pop("time_created")
type_json = object_json.pop("generator_run_type")
index_json = object_json.pop("index")
generator_run = GeneratorRun(
**{
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
)
generator_run._time_created = object_from_json(
time_created_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
generator_run._generator_run_type = object_from_json(
type_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
generator_run._index = object_from_json(
index_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return generator_run
[docs]
def unpack_transition_criteria_from_json(
# pyre-fixme[24]: Generic type `type` expects 1 type parameter, use `typing.Type` to
# avoid runtime subscripting errors.
class_: type,
transition_criteria_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> TransitionCriterion | None:
"""Load Ax transition criteria that depend on Trials from JSON.
Since ``TrialBasedCriterion`` contain lists of ``TrialStatus``,
the json for these criterion needs to be carefully unpacked and
re-processed via ``object_from_json`` in order to maintain correct
typing. We pass in ``class_`` in order to correctly handle all classes
which inherit from ``TrialBasedCriterion`` (ex: ``MaxTrials``).
"""
new_dict = {}
for key, value in transition_criteria_json.items():
new_val = object_from_json(
object_json=value,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
new_dict[key] = new_val
return class_(**new_dict)
[docs]
def search_space_from_json(
search_space_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> SearchSpace:
"""Load a SearchSpace from JSON.
This function is necessary due to the coupled loading of SearchSpace
and parameter constraints.
"""
parameters = object_from_json(
search_space_json.pop("parameters"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
json_param_constraints = search_space_json.pop("parameter_constraints")
return SearchSpace(
parameters=parameters,
parameter_constraints=parameter_constraints_from_json(
parameter_constraint_json=json_param_constraints,
parameters=parameters,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
[docs]
def parameter_constraints_from_json(
parameter_constraint_json: list[dict[str, Any]],
parameters: list[Parameter],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> list[ParameterConstraint]:
"""Load ParameterConstraints from JSON.
Order and SumConstraint are tied to a search space,
and require that SearchSpace's parameters to be passed in for decoding.
Args:
parameter_constraint_json: JSON representation of parameter constraints.
parameters: Parameter definitions for decoding via parameter names.
Returns:
parameter_constraints: Python classes for parameter constraints.
"""
parameter_constraints = []
parameter_map = {p.name: p for p in parameters}
for constraint in parameter_constraint_json:
if constraint["__type"] == "OrderConstraint":
lower_parameter = parameter_map[constraint["lower_name"]]
upper_parameter = parameter_map[constraint["upper_name"]]
parameter_constraints.append(
OrderConstraint(
lower_parameter=lower_parameter, upper_parameter=upper_parameter
)
)
elif constraint["__type"] == "SumConstraint":
parameters = [parameter_map[name] for name in constraint["parameter_names"]]
parameter_constraints.append(
SumConstraint(
parameters=parameters,
is_upper_bound=constraint["is_upper_bound"],
bound=constraint["bound"],
)
)
else:
parameter_constraints.append(
object_from_json(
constraint,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
)
return parameter_constraints
[docs]
def trials_from_json(
experiment: Experiment,
trials_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> dict[int, BaseTrial]:
"""Load Ax Trials from JSON."""
loaded_trials = {}
for index, batch_json in trials_json.items():
is_trial = batch_json["__type"] == "Trial"
batch_json = {
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in batch_json.items()
if k != "__type"
}
loaded_trials[int(index)] = (
trial_from_json(experiment=experiment, **batch_json)
if is_trial
else batch_trial_from_json(experiment=experiment, **batch_json)
)
return loaded_trials
[docs]
def data_from_json(
data_by_trial_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> dict[int, "OrderedDict[int, Data]"]:
"""Load Ax Data from JSON."""
data_by_trial = object_from_json(
data_by_trial_json,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
# hack necessary because Python's json module converts dictionary
# keys to strings: https://stackoverflow.com/q/1450957
return {
int(k): OrderedDict({int(k2): v2 for k2, v2 in v.items()})
for k, v in data_by_trial.items()
}
[docs]
def multi_type_experiment_from_json(
object_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> MultiTypeExperiment:
"""Load AE MultiTypeExperiment from JSON."""
experiment_info = _get_experiment_info(object_json)
_metric_to_canonical_name = object_json.pop("_metric_to_canonical_name")
_metric_to_trial_type = object_json.pop("_metric_to_trial_type")
_trial_type_to_runner = object_from_json(
object_json.pop("_trial_type_to_runner"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
tracking_metrics = object_from_json(
object_json.pop("tracking_metrics"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
# not relevant to multi type experiment
del object_json["runner"]
kwargs = {
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
kwargs["default_runner"] = _trial_type_to_runner[object_json["default_trial_type"]]
experiment = MultiTypeExperiment(**kwargs)
for metric in tracking_metrics:
experiment._tracking_metrics[metric.name] = metric
experiment._metric_to_canonical_name = _metric_to_canonical_name
experiment._metric_to_trial_type = _metric_to_trial_type
experiment._trial_type_to_runner = _trial_type_to_runner
_load_experiment_info(
exp=experiment,
exp_info=experiment_info,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return experiment
[docs]
def experiment_from_json(
object_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> Experiment:
"""Load Ax Experiment from JSON."""
experiment_info = _get_experiment_info(object_json)
experiment = Experiment(
**{
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
)
experiment._arms_by_name = {}
_load_experiment_info(
exp=experiment,
exp_info=experiment_info,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return experiment
def _get_experiment_info(object_json: dict[str, Any]) -> dict[str, Any]:
"""Returns basic information from `Experiment` object_json."""
return {
"time_created_json": object_json.pop("time_created"),
"trials_json": object_json.pop("trials"),
"experiment_type_json": object_json.pop("experiment_type"),
"data_by_trial_json": object_json.pop("data_by_trial"),
}
def _load_experiment_info(
exp: Experiment,
exp_info: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> None:
"""Loads `Experiment` object with basic information."""
exp._time_created = object_from_json(
exp_info.get("time_created_json"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
exp._trials = trials_from_json(
exp,
exp_info.get("trials_json"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
exp._experiment_type = object_from_json(
exp_info.get("experiment_type_json"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
exp._data_by_trial = data_from_json(
exp_info.get("data_by_trial_json"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for trial in exp._trials.values():
for arm in trial.arms:
exp._register_arm(arm)
if trial.ttl_seconds is not None:
exp._trials_have_ttl = True
if exp.status_quo is not None:
sq = none_throws(exp.status_quo)
exp._register_arm(sq)
def _convert_generation_step_keys_for_backwards_compatibility(
object_json: dict[str, Any],
) -> dict[str, Any]:
"""If necessary, converts keys in a JSON dict representing a `GenerationStep`
for backwards compatibility.
"""
# NOTE: this is a hack to make generation steps able to load after the
# renaming of generation step fields to be in terms of 'trials' rather than
# 'arms'.
keys = list(object_json.keys())
for k in keys:
if "arms" in k:
object_json[k.replace("arms", "trials")] = object_json.pop(k)
if k == "recommended_max_parallelism":
object_json["max_parallelism"] = object_json.pop(k)
return object_json
[docs]
def generation_node_from_json(
generation_node_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> GenerationNode:
"""Load GenerationNode object from JSON."""
# Due to input_constructors being a dictionary with both keys and values being of
# type enum, we must manually decode them here because object_from_json doesn't
# recursively decode dictionary key values.
decoded_input_constructors = None
if "input_constructors" in generation_node_json.keys():
decoded_input_constructors = {
InputConstructorPurpose[key]: object_from_json(
value,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for key, value in generation_node_json.pop("input_constructors").items()
}
return GenerationNode(
node_name=generation_node_json.pop("node_name"),
model_specs=object_from_json(
generation_node_json.pop("model_specs"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
best_model_selector=object_from_json(
generation_node_json.pop("best_model_selector", None),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
should_deduplicate=generation_node_json.pop("should_deduplicate", False),
transition_criteria=(
object_from_json(
generation_node_json.pop("transition_criteria"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if "transition_criteria" in generation_node_json.keys()
else None
),
input_constructors=decoded_input_constructors,
previous_node_name=(
generation_node_json.pop("previous_node_name")
if "previous_node_name" in generation_node_json.keys()
else None
),
trial_type=(
object_from_json(
generation_node_json.pop("trial_type"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if "trial_type" in generation_node_json.keys()
else None
),
)
def _extract_surrogate_spec_from_surrogate_specs(
model_kwargs: dict[str, Any],
) -> dict[str, Any]:
"""If `model_kwargs` includes a `surrogate_specs` key that is a dict
with a single element, this method replaces it with `surrogate_spec`
key with the value of that element.
This helper will keep deserialization of MBM models backwards compatible
even after we remove the ``surrogate_specs`` argument from ``BoTorchModel``.
Args:
model_kwargs: A dictionary of model kwargs to update.
Returns:
If ``surrogate_specs`` is not found or it is found but has multiple elements,
returns ``model_kwargs`` unchanged.
Otherwise, returns a new dictionary with the ``surrogate_specs`` element
replaced with ``surrogate_spec``.
"""
if (specs := model_kwargs.get("surrogate_specs", None)) is None or len(specs) > 1:
return model_kwargs
new_kwargs = model_kwargs.copy()
new_kwargs.pop("surrogate_specs")
new_kwargs["surrogate_spec"] = next(iter(specs.values()))
return new_kwargs
[docs]
def generation_step_from_json(
generation_step_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> GenerationStep:
"""Load generation step from JSON."""
generation_step_json = _convert_generation_step_keys_for_backwards_compatibility(
generation_step_json
)
kwargs = generation_step_json.pop("model_kwargs", None)
kwargs.pop("fit_on_update", None) # Remove deprecated fit_on_update.
if kwargs is not None:
kwargs = _extract_surrogate_spec_from_surrogate_specs(kwargs)
gen_kwargs = generation_step_json.pop("model_gen_kwargs", None)
completion_criteria = (
object_from_json(
generation_step_json.pop("completion_criteria"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if "completion_criteria" in generation_step_json.keys()
else []
)
generation_step = GenerationStep(
model=object_from_json(
generation_step_json.pop("model"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
num_trials=generation_step_json.pop("num_trials"),
min_trials_observed=generation_step_json.pop("min_trials_observed", 0),
completion_criteria=(
completion_criteria if completion_criteria is not None else []
),
max_parallelism=(generation_step_json.pop("max_parallelism", None)),
enforce_num_trials=generation_step_json.pop("enforce_num_trials", True),
model_kwargs=(
_decode_callables_from_references(
object_from_json(
kwargs,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
if kwargs
else {}
),
model_gen_kwargs=(
_decode_callables_from_references(
object_from_json(
gen_kwargs,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
if gen_kwargs
else {}
),
index=generation_step_json.pop("index", -1),
should_deduplicate=generation_step_json.pop("should_deduplicate", False),
)
return generation_step
[docs]
def model_spec_from_json(
model_spec_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> ModelSpec:
"""Load ModelSpec from JSON."""
kwargs = model_spec_json.pop("model_kwargs", None)
kwargs.pop("fit_on_update", None) # Remove deprecated fit_on_update.
if kwargs is not None:
kwargs = _extract_surrogate_spec_from_surrogate_specs(kwargs)
gen_kwargs = model_spec_json.pop("model_gen_kwargs", None)
return ModelSpec(
model_enum=object_from_json(
model_spec_json.pop("model_enum"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
model_kwargs=(
_decode_callables_from_references(
object_from_json(
kwargs,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
if kwargs
else {}
),
model_gen_kwargs=(
_decode_callables_from_references(
object_from_json(
gen_kwargs,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
)
if gen_kwargs
else {}
),
)
[docs]
def generation_strategy_from_json(
generation_strategy_json: dict[str, Any],
experiment: Experiment | None = None,
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> GenerationStrategy:
"""Load generation strategy from JSON."""
nodes = (
object_from_json(
generation_strategy_json.pop("nodes"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if "nodes" in generation_strategy_json
else []
)
steps = object_from_json(
generation_strategy_json.pop("steps"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if len(steps) > 0:
gs = GenerationStrategy(steps=steps, name=generation_strategy_json.pop("name"))
gs._curr = gs._steps[generation_strategy_json.pop("curr_index")]
else:
gs = GenerationStrategy(nodes=nodes, name=generation_strategy_json.pop("name"))
curr_node_name = generation_strategy_json.pop("curr_node_name")
for node in gs._nodes:
if node.node_name == curr_node_name:
gs._curr = node
break
gs._db_id = object_from_json(
generation_strategy_json.pop("db_id"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
gs._experiment = experiment or object_from_json(
generation_strategy_json.pop("experiment"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
gs._generator_runs = object_from_json(
generation_strategy_json.pop("generator_runs"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return gs
[docs]
def surrogate_spec_from_json(
surrogate_spec_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> SurrogateSpec:
"""Construct a surrogate spec from JSON arguments.
If both deprecated args and `model_configs` are found, the deprecated args are
discarded to prevent errors during loading. These would've been made into a
``ModelConfig`` while constructing the ``SurrogateSpec``. This is necessary
to ensure backwards compatibility with ``SurrogateSpec``s that had both attributes.
"""
if "model_configs" in surrogate_spec_json:
for deprecated_arg in [
"botorch_model_class",
"botorch_model_kwargs",
"mll_class",
"mll_kwargs",
"input_transform_classes",
"input_transform_options",
"outcome_transform_classes",
"outcome_transform_options",
"covar_module_class",
"covar_module_kwargs",
"likelihood_class",
"likelihood_kwargs",
]:
surrogate_spec_json.pop(deprecated_arg, None)
return SurrogateSpec(
**{
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in surrogate_spec_json.items()
}
)
[docs]
def surrogate_from_list_surrogate_json(
list_surrogate_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> Surrogate:
logger.warning(
"`ListSurrogate` has been deprecated. Reconstructing a `Surrogate` "
"with as similar properties as possible."
)
if "submodel_input_transforms" in list_surrogate_json:
(
list_surrogate_json["submodel_input_transform_classes"],
list_surrogate_json["submodel_input_transform_options"],
) = get_input_transform_json_components(
list_surrogate_json.pop("submodel_input_transforms"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
if "submodel_outcome_transforms" in list_surrogate_json:
(
list_surrogate_json["submodel_outcome_transform_classes"],
list_surrogate_json["submodel_outcome_transform_options"],
) = get_outcome_transform_json_components(
list_surrogate_json.pop("submodel_outcome_transforms"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
return Surrogate(
botorch_model_class=object_from_json(
object_json=list_surrogate_json.get("botorch_submodel_class"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
model_options=list_surrogate_json.get("submodel_options"),
mll_class=object_from_json(
object_json=list_surrogate_json.get("mll_class"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
mll_options=list_surrogate_json.get("mll_options"),
input_transform_classes=object_from_json(
object_json=list_surrogate_json.get("submodel_input_transform_classes"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
input_transform_options=object_from_json(
object_json=list_surrogate_json.get("submodel_input_transform_options"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
outcome_transform_classes=object_from_json(
object_json=list_surrogate_json.get("submodel_outcome_transform_classes"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
outcome_transform_options=object_from_json(
object_json=list_surrogate_json.get("submodel_outcome_transform_options"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
covar_module_class=object_from_json(
object_json=list_surrogate_json.get("submodel_covar_module_class"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
covar_module_options=list_surrogate_json.get("submodel_covar_module_options"),
likelihood_class=object_from_json(
object_json=list_surrogate_json.get("submodel_likelihood_class"),
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
),
likelihood_options=list_surrogate_json.get("submodel_likelihood_options"),
)
[docs]
def objective_from_json(
object_json: dict[str, Any],
decoder_registry: TDecoderRegistry = CORE_DECODER_REGISTRY,
class_decoder_registry: TClassDecoderRegistry = CORE_CLASS_DECODER_REGISTRY,
) -> Objective:
"""Load an ``Objective`` from JSON in a backwards compatible way.
If both ``minimize`` and ``lower_is_better`` are specified but have conflicting
values, this will overwrite ``lower_is_better=minimize`` to resolve the conflict.
# TODO: Do we need to do this for scalarized objective as well?
"""
input_args = {
k: object_from_json(
v,
decoder_registry=decoder_registry,
class_decoder_registry=class_decoder_registry,
)
for k, v in object_json.items()
}
metric = input_args.pop("metric")
minimize = input_args.pop("minimize")
if metric.lower_is_better is not None and metric.lower_is_better != minimize:
logger.warning(
f"Metric {metric.name} has {metric.lower_is_better=} but objective "
f"specifies {minimize=}. Overwriting ``lower_is_better`` to match "
f"the optimization direction {minimize=}."
)
metric.lower_is_better = minimize
return Objective(
metric=metric,
minimize=minimize,
**input_args, # For future compatibility.
)
def _update_deprecated_model_registry(name: str) -> str:
"""Update the enum name for deprecated model registry entries to point to
a replacement model. This will log an exception to alert the user to the change.
The replacement models are listed in `_DEPRECATED_MODEL_TO_REPLACEMENT` above.
If a deprecated model does not list a replacement, nothing will be done and it
will error out while looking it up in the corresponding enum.
Args:
name: The name of the ``Models`` enum.
Returns:
Either the given name or the name of a replacement ``Models`` enum.
"""
if name in _DEPRECATED_MODEL_TO_REPLACEMENT:
new_name = _DEPRECATED_MODEL_TO_REPLACEMENT[name]
logger.exception(
f"{name} model is deprecated and replaced by Models.{new_name}. "
f"Please use {new_name} in the future. Note that this warning only "
"enables deserialization of experiments with deprecated models. "
"Model fitting with the loaded experiment may still fail. "
)
return new_name
else:
return name
