#!/usr/bin/env python3
# Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved.
from typing import Any, Callable, Dict, List, Optional, Set, Tuple
import numpy as np
from ax.core.objective import Objective, ScalarizedObjective
from ax.core.observation import ObservationData, ObservationFeatures
from ax.core.optimization_config import OptimizationConfig
from ax.core.outcome_constraint import ComparisonOp, OutcomeConstraint
from ax.core.search_space import SearchSpace
from ax.core.types import TBounds, TConfig
from ax.modelbridge.base import ModelBridge
from ax.modelbridge.modelbridge_utils import (
extract_parameter_constraints,
get_bounds_and_task,
get_fixed_features,
parse_observation_features,
pending_observations_as_array,
transform_callback,
)
FIT_MODEL_ERROR = "Model must be fit before {action}."
[docs]class ArrayModelBridge(ModelBridge):
"""A model bridge for using array-based models.
Requires that all non-task parameters have been transformed to
RangeParameters with float type and no log scale. Task parameters must be
transformed to RangeParameters with int type.
This will convert all parameter types to float and put data into arrays.
"""
model: Any
outcomes: List[str]
parameters: List[str]
def _fit(
self,
model: Any,
search_space: SearchSpace,
observation_features: List[ObservationFeatures],
observation_data: List[ObservationData],
) -> None:
# Convert observations to arrays
self.parameters = list(search_space.parameters.keys())
# move fidelity parameters to the last columns
for para in search_space.parameters:
if search_space.parameters[para].is_fidelity:
self.parameters.remove(para)
self.parameters.append(para)
all_metric_names: Set[str] = set()
for od in observation_data:
all_metric_names.update(od.metric_names)
self.outcomes = list(all_metric_names)
# Convert observations to arrays
Xs_array, Ys_array, Yvars_array, in_design = _convert_observations(
observation_data=observation_data,
observation_features=observation_features,
outcomes=self.outcomes,
parameters=self.parameters,
)
self.training_in_design = in_design
# Extract bounds and task features
bounds, task_features, fidelity_features = get_bounds_and_task(
search_space, self.parameters
)
# Fit
self._model_fit(
model=model,
Xs=Xs_array,
Ys=Ys_array,
Yvars=Yvars_array,
bounds=bounds,
task_features=task_features,
feature_names=self.parameters,
fidelity_features=fidelity_features,
)
def _model_fit(
self,
model: Any,
Xs: List[np.ndarray],
Ys: List[np.ndarray],
Yvars: List[np.ndarray],
bounds: List[Tuple[float, float]],
task_features: List[int],
feature_names: List[str],
fidelity_features: List[int],
) -> None:
"""Fit the model, given numpy types.
"""
self.model = model
self.model.fit(
Xs=Xs,
Ys=Ys,
Yvars=Yvars,
bounds=bounds,
task_features=task_features,
feature_names=feature_names,
fidelity_features=fidelity_features,
)
def _update(
self,
observation_features: List[ObservationFeatures],
observation_data: List[ObservationData],
) -> None:
"""Apply terminal transform for update data, and pass along to model."""
Xs_array, Ys_array, Yvars_array, in_design = _convert_observations(
observation_data=observation_data,
observation_features=observation_features,
outcomes=self.outcomes,
parameters=self.parameters,
)
# Update in-design status for these new points.
self.training_in_design = in_design
self._model_update(Xs=Xs_array, Ys=Ys_array, Yvars=Yvars_array)
def _model_update(
self, Xs: List[np.ndarray], Ys: List[np.ndarray], Yvars: List[np.ndarray]
) -> None:
self.model.update(Xs=Xs, Ys=Ys, Yvars=Yvars)
def _predict(
self, observation_features: List[ObservationFeatures]
) -> List[ObservationData]:
# Convert observations to array
X = np.array(
[[of.parameters[p] for p in self.parameters] for of in observation_features]
)
f, cov = self._model_predict(X=X)
# Convert arrays to observations
return array_to_observation_data(f=f, cov=cov, outcomes=self.outcomes)
def _model_predict(
self, X: np.ndarray
) -> Tuple[np.ndarray, np.ndarray]: # pragma: no cover
return self.model.predict(X=X)
def _gen(
self,
n: int,
search_space: SearchSpace,
pending_observations: Dict[str, List[ObservationFeatures]],
fixed_features: ObservationFeatures,
model_gen_options: Optional[TConfig] = None,
optimization_config: Optional[OptimizationConfig] = None,
) -> Tuple[List[ObservationFeatures], List[float], Optional[ObservationFeatures]]:
"""Generate new candidates according to search_space and
optimization_config.
The outcome constraints should be transformed to no longer be relative.
"""
# Validation
if not self.parameters: # pragma: no cover
raise ValueError(FIT_MODEL_ERROR.format(action="_gen"))
# Extract bounds
bounds, _, _ = get_bounds_and_task(search_space, self.parameters)
if optimization_config is None:
raise ValueError(
"ArrayModelBridge requires an OptimizationConfig to be specified"
)
if self.outcomes is None or len(self.outcomes) == 0: # pragma: no cover
raise ValueError("No outcomes found during model fit--data are missing.")
validate_optimization_config(optimization_config, self.outcomes)
objective_weights = extract_objective_weights(
objective=optimization_config.objective, outcomes=self.outcomes
)
outcome_constraints = extract_outcome_constraints(
outcome_constraints=optimization_config.outcome_constraints,
outcomes=self.outcomes,
)
linear_constraints = extract_parameter_constraints(
search_space.parameter_constraints, self.parameters
)
fixed_features_dict = get_fixed_features(fixed_features, self.parameters)
pending_array = pending_observations_as_array(
pending_observations, self.outcomes, self.parameters
)
# Generate the candidates
X, w = self._model_gen(
n=n,
bounds=bounds,
objective_weights=objective_weights,
outcome_constraints=outcome_constraints,
linear_constraints=linear_constraints,
fixed_features=fixed_features_dict,
pending_observations=pending_array,
model_gen_options=model_gen_options,
rounding_func=transform_callback(self.parameters, self.transforms),
)
# Transform array to observations
observation_features = parse_observation_features(X, self.parameters)
xbest = self._model_best_point(
bounds=bounds,
objective_weights=objective_weights,
outcome_constraints=outcome_constraints,
linear_constraints=linear_constraints,
fixed_features=fixed_features_dict,
model_gen_options=model_gen_options,
)
best_obsf = (
None
if xbest is None
else ObservationFeatures(
parameters={p: float(xbest[i]) for i, p in enumerate(self.parameters)}
)
)
return observation_features, w.tolist(), best_obsf
def _model_gen(
self,
n: int,
bounds: List[Tuple[float, float]],
objective_weights: np.ndarray,
outcome_constraints: Optional[Tuple[np.ndarray, np.ndarray]],
linear_constraints: Optional[Tuple[np.ndarray, np.ndarray]],
fixed_features: Optional[Dict[int, float]],
pending_observations: Optional[List[np.ndarray]],
model_gen_options: Optional[TConfig],
rounding_func: Callable[[np.ndarray], np.ndarray],
) -> Tuple[np.ndarray, np.ndarray]: # pragma: no cover
return self.model.gen(
n=n,
bounds=bounds,
objective_weights=objective_weights,
outcome_constraints=outcome_constraints,
linear_constraints=linear_constraints,
fixed_features=fixed_features,
pending_observations=pending_observations,
model_gen_options=model_gen_options,
rounding_func=rounding_func,
)
def _model_best_point(
self,
bounds: List[Tuple[float, float]],
objective_weights: np.ndarray,
outcome_constraints: Optional[Tuple[np.ndarray, np.ndarray]],
linear_constraints: Optional[Tuple[np.ndarray, np.ndarray]],
fixed_features: Optional[Dict[int, float]],
model_gen_options: Optional[TConfig],
) -> Optional[np.ndarray]: # pragma: no cover
try:
return self.model.best_point(
bounds=bounds,
objective_weights=objective_weights,
outcome_constraints=outcome_constraints,
linear_constraints=linear_constraints,
fixed_features=fixed_features,
model_gen_options=model_gen_options,
)
except NotImplementedError:
return None
def _cross_validate(
self,
obs_feats: List[ObservationFeatures],
obs_data: List[ObservationData],
cv_test_points: List[ObservationFeatures],
) -> List[ObservationData]:
"""Make predictions at cv_test_points using only the data in obs_feats
and obs_data.
"""
Xs_train, Ys_train, Yvars_train, _ = _convert_observations(
observation_data=obs_data,
observation_features=obs_feats,
outcomes=self.outcomes,
parameters=self.parameters,
)
X_test = np.array(
[[obsf.parameters[p] for p in self.parameters] for obsf in cv_test_points]
)
# Use the model to do the cross validation
f_test, cov_test = self._model_cross_validate(
Xs_train=Xs_train, Ys_train=Ys_train, Yvars_train=Yvars_train, X_test=X_test
)
# Convert array back to ObservationData
return array_to_observation_data(f=f_test, cov=cov_test, outcomes=self.outcomes)
def _model_cross_validate(
self,
Xs_train: List[np.ndarray],
Ys_train: List[np.ndarray],
Yvars_train: List[np.ndarray],
X_test: np.ndarray,
) -> Tuple[np.ndarray, np.ndarray]: # pragma: no cover
return self.model.cross_validate(
Xs_train=Xs_train, Ys_train=Ys_train, Yvars_train=Yvars_train, X_test=X_test
)
def _transform_callback(self, x: np.ndarray) -> np.ndarray:
"""A function that performs the `round trip` transformations.
This function is passed to _model_gen.
"""
# apply reverse terminal transform to turn array to ObservationFeatures
observation_features = [
ObservationFeatures(
parameters={p: float(x[i]) for i, p in enumerate(self.parameters)}
)
]
# reverse loop through the transforms and do untransform
# pyre-fixme[6]: Expected `Sequence[_T]` for 1st param but got `ValuesView[Tr...
for t in reversed(self.transforms.values()):
observation_features = t.untransform_observation_features(
observation_features
)
# forward loop through the transforms and do transform
for t in self.transforms.values():
observation_features = t.transform_observation_features(
observation_features
)
new_x: List[float] = [
float(observation_features[0].parameters[p]) for p in self.parameters
]
# turn it back into an array
return np.array(new_x)
[docs]def array_to_observation_data(
f: np.ndarray, cov: np.ndarray, outcomes: List[str]
) -> List[ObservationData]:
"""Convert arrays of model predictions to a list of ObservationData.
Args:
f: An (n x d) array
cov: An (n x d x d) array
outcomes: A list of d outcome names
Returns: A list of n ObservationData
"""
observation_data = []
for i in range(f.shape[0]):
observation_data.append(
ObservationData(
metric_names=list(outcomes),
means=f[i, :].copy(),
covariance=cov[i, :, :].copy(),
)
)
return observation_data
def _convert_observations(
observation_data: List[ObservationData],
observation_features: List[ObservationFeatures],
outcomes: List[str],
parameters: List[str],
) -> Tuple[List[np.ndarray], List[np.ndarray], List[np.ndarray], List[bool]]:
Xs: List[List[List[float]]] = [[] for _ in outcomes]
Ys: List[List[float]] = [[] for _ in outcomes]
Yvars: List[List[float]] = [[] for _ in outcomes]
in_design: List[bool] = []
for i, of in enumerate(observation_features):
try:
x: List[float] = [
float(of.parameters[p]) for p in parameters # pyre-ignore
]
in_design.append(True)
except (KeyError, TypeError):
# out-of-design point; leave out.
in_design.append(False)
continue
for j, m in enumerate(observation_data[i].metric_names):
k = outcomes.index(m)
Xs[k].append(x)
Ys[k].append(observation_data[i].means[j])
Yvars[k].append(observation_data[i].covariance[j, j])
Xs_array = [np.array(x_) for x_ in Xs]
Ys_array = [np.array(y_)[:, None] for y_ in Ys]
Yvars_array = [np.array(var)[:, None] for var in Yvars]
return Xs_array, Ys_array, Yvars_array, in_design
[docs]def validate_optimization_config(
optimization_config: OptimizationConfig, outcomes: List[str]
) -> None:
"""Validate optimization config against model fitted outcomes.
Args:
optimization_config: Config to validate.
outcomes: List of metric names w/ valid model fits.
Raises:
ValueError if:
1. Relative constraints are found
2. Optimization metrics are not present in model fitted outcomes.
"""
for c in optimization_config.outcome_constraints:
if c.relative:
raise ValueError(f"{c} is a relative constraint.")
if c.metric.name not in outcomes: # pragma: no cover
raise ValueError(
f"Outcome constraint metric {c.metric.name} not found in fitted data."
)
obj_metric_names = [m.name for m in optimization_config.objective.metrics]
for obj_metric_name in obj_metric_names:
if obj_metric_name not in outcomes: # pragma: no cover
raise ValueError(
f"Objective metric {obj_metric_name} not found in fitted data."
)
